Genomics Data Management Portal

Explore, search, and visualize genomics sequences, annotations, and publications stored in the Chado database.

Or view the Data Summary for an overview of all loaded organisms.

Key Features & Capabilities

A comprehensive ecosystem designed for biological database curation and research.

Multi-Format Data Loaders

Ingest data seamlessly from standard bioinformatics formats including FASTA, GFF3, OBO, BibTeX, BLAST, InterProScan, and OrthoMCL directly into the Chado relational schema.

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PostgreSQL Faceted Search

Execute complex queries powered by PostgreSQL full-text search. Filter features by organism, sequence ontology terms, orthology, coexpression groups, and related publications.

Start Searching

Genome Browser Integration

Interactive visual analysis of features. Machado Genomics API delivers data directly to the embedded JBrowse genome browser for sequence and annotation alignments.

Browse Organisms
4
Organisms
Loaded species and infraspecific strains
3,442
Genomic Features
Genes, mRNAs, polypeptides, and sequence elements
8+
Ingestion Formats
FASTA, GFF, OBO, BLAST, InterPro, OrthoMCL, BibTeX, Tabular

How Machado Genomics Operates

From raw genomic files to interactive database search and visualization.

1

Load Data

Administrators run commands or use data tools to load genomic files into the database.

2

Index & Query

PostgreSQL full-text index updates automatically, enabling fast, multi-faceted searches across millions of features.

3

Discover

Users inspect features, view analysis results, download bulk data, and browse via JBrowse.