Nelore Genomics Data Management Portal

Nineteen genomic papers on Nelore cattle were added to the database covering approaches, including QTLs, eQTLs, gene co-expression, mRNA–miRNA networks, epigenetics (methylation and histone modifications), copy number variation (CNV), proteomics, genetic polymorphisms and expression profile associated with traits such as feed efficiency, meat tenderness, fat deposition and mineral content.

The reference genome ARS-UCD has been updated to version 1.3, and the UMD genome assembly has been updated to version 3.1. Updated DIAMOND BLAST version used to 2.1.9. Updated InterproScan used to 5.67-99.0. Added DIAMOND BLAST v2.1.9 against the UniProt v2024_04 databases, incorporating both the Swiss-Prot and TrEMBL protein datasets. Updated The Cattle QTL Database (QTLdb) to Release 54. Data Summary section has been updated to include additional details.

Introducing the first release of the Nelore Bioinformatics Resources. This platform integrates the bovine reference genome with various biological datasets, including genes, transcripts, proteins, SNVs, QTLs and RNA-Seq. These datasets have been analyzed and indexed, offering you a user-friendly interface for efficient data exploration. For detailed information to the data sources and computational analyses, please refer to the Data Summary section.

New dataset loaded: gene annotations from publications and new feature: search by DOI

New dataset loaded: CNVs

New datasets were loaded: Genes and transcripts IDs from Ensembl, aseQTL from the research paper 10.1038/s41598-021-86782-2, and aseSNV from the research paper 10.1038/s41598-020-67089-0

This is the first draft version of the Nelore Bioinformatics Resources. It integrates the bovine reference genome ARS-USD1.2 with other biological datasets such as RNA-Seq, SNV, and QTL. The datasets were analyzed and indexed for you to mine in a clean interface. Detailed information related to the data sources and computational analyses can be found at Data summary.